IEEE transactions on medical imaging
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IEEE Trans Med Imaging · Nov 2006
Nonrigid 2-D/3-D registration for patient specific bronchoscopy simulation with statistical shape modeling: phantom validation.
This paper presents a nonrigid registration two-dimensional/three-dimensional (2-D/3-D) framework and its phantom validation for subject-specific bronchoscope simulation. The method exploits the recent development of five degrees-of-freedom miniaturized catheter tip electromagnetic trackers such that the position and orientation of the bronchoscope can be accurately determined. This allows the effective recovery of unknown camera rotation and airway deformation, which is modelled by an active shape model (ASM). ⋯ The method reduces the number of parameters that control the deformation, and thus greatly simplifies the optimisation procedure. Subsequently, pq-based registration is performed to recover both the camera pose and parameters of the ASM. Detailed assessment of the algorithm is performed on a deformable airway phantom, with the ground truth data being provided by an additional six degrees-of-freedom electromagnetic (EM) tracker to monitor the level of simulated respiratory motion.
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IEEE Trans Med Imaging · May 2006
Method to correct intensity inhomogeneity in MR images for atherosclerosis characterization.
We are developing methods to characterize atherosclerotic disease in human carotid arteries using multiple MR images having different contrast mechanisms (T1W, T2W, PDW). To enable the use of voxel gray values for interpretation of disease, we created a new method, local entropy minimization with a bicubic spline model (LEMS), to correct the severe (approximately 80%) intensity inhomogeneity that arises from the surface coil array. This entropy-based method does not require classification and robustly addresses some problems that are more severe than those found in brain imaging, including noise, steep bias field, sensitivity of artery wall voxels to edge artifacts, and signal voids near the artery wall. ⋯ Following LEMS correction, skeletal muscles in patient images were relatively isointense across the field of view. In the physical phantom, LEMS reduced the variation in the image to 1.9% and across the vessel wall region to 2.5%, a value which should be sufficient to distinguish plaque tissue types, based on literature measurements. In conclusion, we believe that the correction method shows promise for aiding human and computerized tissue classification from MR signal intensities.
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IEEE Trans Med Imaging · May 2006
Comparative StudySimulation of tissue atrophy using a topology preserving transformation model.
We propose a method to simulate atrophy and other similar volumetric change effects on medical images. Given a desired level of atrophy, we find a dense warping deformation that produces the corresponding levels of volumetric loss on the labeled tissue using an energy minimization strategy. ⋯ The method does not make assumptions regarding the mechanics of tissue deformation, and provides a framework where a pre-specified pattern of atrophy can readily be simulated. Furthermore, it provides exact correspondences between images prior and posterior to the atrophy that can be used to evaluate provisional image registration and atrophy quantification algorithms.
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IEEE Trans Med Imaging · May 2006
Deformation-based mapping of volume change from serial brain MRI in the presence of local tissue contrast change.
This paper is motivated by the analysis of serial structural magnetic resonance imaging (MRI) data of the brain to map patterns of local tissue volume loss or gain over time, using registration-based deformation tensor morphometry. Specifically, we address the important confound of local tissue contrast changes which can be induced by neurodegenerative or neurodevelopmental processes. These not only modify apparent tissue volume, but also modify tissue integrity and its resulting MRI contrast parameters. ⋯ A quantitative evaluation of the method when compared to earlier approaches is included using both synthetic data and clinical imaging data. Results show a significant reduction in errors when tissue contrast changes locally between acquisitions. Finally, examples of applying the technique to map different patterns of atrophy rate in different neurodegenerative conditions is included.
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IEEE Trans Med Imaging · Apr 2006
Patient-specific bronchoscopy visualization through BRDF estimation and disocclusion correction.
This paper presents an image-based method for virtual bronchoscope with photo-realistic rendering. The technique is based on recovering bidirectional reflectance distribution function (BRDF) parameters in an environment where the choice of viewing positions, directions, and illumination conditions are restricted. Video images of bronchoscopy examinations are combined with patient-specific three-dimensional (3-D) computed tomography data through two-dimensional (2-D)/3-D registration and shading model parameters are then recovered by exploiting the restricted lighting configurations imposed by the bronchoscope. ⋯ New views not present in the original bronchoscopy video are rendered by evaluating the BRDF with different viewing and illumination parameters. This allows free navigation of the acquired 3-D model with enhanced photo-realism. To assess the practical value of the proposed technique, a detailed visual scoring that involves both real and rendered bronchoscope images is conducted.