• Eur. J. Clin. Microbiol. Infect. Dis. · Jan 2021

    Comparative Study

    Combined throat/nasal swab sampling for SARS-CoV-2 is equivalent to nasopharyngeal sampling.

    • Vlek A L M ALM Department of Microbiology and Immunology, Diakonessenhuis Utrecht, Utrecht, the Netherlands. avlek@diakhuis.nl., T S Wesselius, R Achterberg, and Thijsen S F T SFT Department of Microbiology and Immunology, Diakonessenhuis Utrecht, Utrecht, the Netherlands..
    • Department of Microbiology and Immunology, Diakonessenhuis Utrecht, Utrecht, the Netherlands. avlek@diakhuis.nl.
    • Eur. J. Clin. Microbiol. Infect. Dis. 2021 Jan 1; 40 (1): 193-195.

    PurposePCR on a nasopharyngeal sample is the reference method for the detection of SARS-nCoV-2. However, combined throat/nasal sampling as a testing method has several advantages. We compared the combined throat/nasal sampling with nasopharyngeal sampling for detection of SARS-CoV-2 in healthcare workers suspected of COVID-19.MethodsIn 107 healthcare workers with symptoms of COVID-19, combined throat/nasal sampling and nasopharyngeal sampling was performed. Detection of SARS-CoV-2 was performed by RT-PCR targeting.ResultsA total of 80 healthcare workers (74.8%) tested negative with both sampling methods, and 25 healthcare workers (23.4%) tested positive with both sampling methods. There were two discrepant results with positive PCR in combined throat/nasal swabs and negative PCR in nasopharyngeal swabs (1.9%). The κ index for concordance between the 2 sampling methods was high (0.95). The median cycle threshold (Ct) value of PCR on nasopharyngeal samples was significantly lower than the Ct value of PCR on combined throat/nasal samples (19 (IQR 17-20) versus 21 (IQR 18-29) cycles, p value 0.01).ConclusionCombined throat/nasal swabs yield a similar sensitivity to detect SARS-CoV-2 as nasopharyngeal swabs and are a good alternative sampling method, despite a lower Ct value for the nasopharyngeal samples.

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