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Nucleic acids research · Jan 2014
Soybean knowledge base (SoyKB): a web resource for integration of soybean translational genomics and molecular breeding.
- Trupti Joshi, Michael R Fitzpatrick, Shiyuan Chen, Yang Liu, Hongxin Zhang, Ryan Z Endacott, Eric C Gaudiello, Gary Stacey, Henry T Nguyen, and Dong Xu.
- Department of Computer Science, University of Missouri, Columbia, MO 65211, USA, Christopher S. Bond Life Sciences Center, University of Missouri, Columbia, MO 65211, USA, National Center for Soybean Biotechnology, University of Missouri, Columbia, MO 65211, USA, Informatics Institute, University of Missouri, Columbia, MO 65211, USA and Division of Plant Sciences, University of Missouri, Columbia, MO 65211, USA.
- Nucleic Acids Res. 2014 Jan 1; 42 (Database issue): D1245-52.
AbstractSoybean Knowledge Base (http://soykb.org) is a comprehensive web resource developed for bridging soybean translational genomics and molecular breeding research. It provides information for six entities including genes/proteins, microRNAs/sRNAs, metabolites, single nucleotide polymorphisms, plant introduction lines and traits. It also incorporates many multi-omics datasets including transcriptomics, proteomics, metabolomics and molecular breeding data, such as quantitative trait loci, traits and germplasm information. Soybean Knowledge Base has a new suite of tools such as In Silico Breeding Program for soybean breeding, which includes a graphical chromosome visualizer for ease of navigation. It integrates quantitative trait loci, traits and germplasm information along with genomic variation data, such as single nucleotide polymorphisms, insertions, deletions and genome-wide association studies data, from multiple soybean cultivars and Glycine soja.
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