• Academic radiology · May 2020

    Technical and Clinical Factors Affecting Success Rate of a Deep Learning Method for Pancreas Segmentation on CT.

    • Mohammad Hadi Bagheri, Holger Roth, William Kovacs, Jianhua Yao, Faraz Farhadi, Xiaobai Li, and Ronald M Summers.
    • Clinical Image Processing Service, Radiology and Imaging Sciences Department, Clinical Center, National Institutes of Health, Bethesda, MD 20892-1182, USA.
    • Acad Radiol. 2020 May 1; 27 (5): 689-695.

    PurposeAccurate pancreas segmentation has application in surgical planning, assessment of diabetes, and detection and analysis of pancreatic tumors. Factors that affect pancreas segmentation accuracy have not been previously reported. The purpose of this study is to identify technical and clinical factors that adversely affect the accuracy of pancreas segmentation on CT.Method And MaterialsIn this IRB and HIPAA compliant study, a deep convolutional neural network was used for pancreas segmentation in a publicly available archive of 82 portal-venous phase abdominal CT scans of 53 men and 29 women. The accuracies of the segmentations were evaluated by the Dice similarity coefficient (DSC). The DSC was then correlated with demographic and clinical data (age, gender, height, weight, body mass index), CT technical factors (image pixel size, slice thickness, presence or absence of oral contrast), and CT imaging findings (volume and attenuation of pancreas, visceral abdominal fat, and CT attenuation of the structures within a 5 mm neighborhood of the pancreas).ResultsThe average DSC was 78% ± 8%. Factors that were statistically significantly correlated with DSC included body mass index (r = 0.34, p < 0.01), visceral abdominal fat (r = 0.51, p < 0.0001), volume of the pancreas (r = 0.41, p = 0.001), standard deviation of CT attenuation within the pancreas (r = 0.30, p = 0.01), and median and average CT attenuation in the immediate neighborhood of the pancreas (r = -0.53, p < 0.0001 and r = -0.52, p < 0.0001). There were no significant correlations between the DSC and the height, gender, or mean CT attenuation of the pancreas.ConclusionIncreased visceral abdominal fat and accumulation of fat within or around the pancreas are major factors associated with more accurate segmentation of the pancreas. Potential applications of our findings include assessment of pancreas segmentation difficulty of a particular scan or dataset and identification of methods that work better for more challenging pancreas segmentations.Copyright © 2019. Published by Elsevier Inc.

      Pubmed     Full text   Copy Citation     Plaintext  

      Add institutional full text...

    Notes

     
    Knowledge, pearl, summary or comment to share?
    300 characters remaining
    help        
    You can also include formatting, links, images and footnotes in your notes
    • Simple formatting can be added to notes, such as *italics*, _underline_ or **bold**.
    • Superscript can be denoted by <sup>text</sup> and subscript <sub>text</sub>.
    • Numbered or bulleted lists can be created using either numbered lines 1. 2. 3., hyphens - or asterisks *.
    • Links can be included with: [my link to pubmed](http://pubmed.com)
    • Images can be included with: ![alt text](https://bestmedicaljournal.com/study_graph.jpg "Image Title Text")
    • For footnotes use [^1](This is a footnote.) inline.
    • Or use an inline reference [^1] to refer to a longer footnote elseweher in the document [^1]: This is a long footnote..

    hide…

What will the 'Medical Journal of You' look like?

Start your free 21 day trial now.

We guarantee your privacy. Your email address will not be shared.