• M John Albert, Ghayda Al-Hashem, and Vincent O Rotimi.
• Department of Microbiology, College of Medicine, Kuwait University, Kuwait City, Kuwait.
• Med Princ Pract. 2022 Jan 1; 31 (5): 493496493-496.

ObjectiveA multiplex gyrB PCR assay has been used to diagnose Acinetobacter baumannii. However, this assay has not been validated against the gold standard DNA-DNA hybridization assay, which is a laborious method. DNA-DNA hybridization assay is now replaced by whole genome sequence (WGS)-based methods. Two such methods are a k-mer-based search of sequence reads using the Kraken 2 program and average nucleotide identity (ANI). The objective was to validate the gyrB PCR assay with WGS-based methods.Subjects And MethodsWe cultured 270 sequential A. baumannii isolates from the rectal swabs of 32 adult patients. The identity of the isolates was determined by gyrB PCR. The sequences of 269 isolates were determined by Illumina sequencing and the taxonomy was inferred by the Kraken 2 program and ANI.ResultsAll the 269 isolates were confirmed as A. baumannii by Kraken 2 and ANI.ConclusionThe gyrB PCR assay is now validated for easy identification of A. baumannii in comparison with gold standard WGS-based assays.© 2022 The Author(s). Published by S. Karger AG, Basel.

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