Computer methods and programs in biomedicine
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Comput Methods Programs Biomed · Nov 2020
Machine learning algorithms to predict early pregnancy loss after in vitro fertilization-embryo transfer with fetal heart rate as a strong predictor.
According to previous studies, after in vitro fertilization-embryo transfer (IVF-ET) there exist a high early pregnancy loss (EPL) rate. The objectives of this study were to construct a prediction model of embryonic development by using machine learning algorithms based on historical case data, in this way doctors can make more accurate suggestions on the number of patient follow-ups, and provide decision support for doctors who are relatively inexperienced in clinical practice. ⋯ In this study, we established and compared six classification models to accurately predict EPL after the appearance of embryonic cardiac activity undergoing IVF-ET. Finally, Random Forest model outperformed the others. The implementation of Random Forest model in clinical environment can assist doctors to make clinical decisions.
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Comput Methods Programs Biomed · Nov 2020
Non Pharmaceutical Interventions for Optimal Control of COVID-19.
The outbreak of the current pandemic begun from the first individual of a 55-year old from Hubei province in China, the disease instigated by the new coronavirus spreading across the world. Scientists presently speculate this coronavirus, SARS-CoV-2, originated in a bat and by one way or another jumped to another creature, potentially the pangolin, which at that point gave it to people. The ailment is currently spreading between individuals with no animal delegate. Researchers are struggling to follow the infection back to where it started to become familiar with its spread. In the event that, for example, specialists can locate the soonest cases, they might have the option to distinguish the creature have where the infection hides. In March and April 2020, researchers detailed that this virus created normally. Coronavirus has been become of the serious global phenomena in the recent years and has negative effects in the entire world health and economy. The virus is believed to have been associated with a host animal which human contracted. Subsequently, human-to-human infection began. Through migration as humans have become complex with easy mobility the disease has traveled to the entire continent. Now, numerous scientist are going on in the hope of obtaining medication and vaccination to prevent the spread of the disease and mortality of the disease. It is important that we obtain quantitative and qualitative information about the etiology of this disease which is crucial. Mathematical modeling is capable of providing qualitative information on many parameters that guides the decision making of health practitioners. In this work we focus the optimal control of COVID-19 with the help of Non Pharmaceutical Interventions (NPIs). To find the role of factors/parameters in the transmission of the syndrome we find R0; the ratio of reproduction for the proposed model. ⋯ We check the existence of the optimal solution for the system. At the end, Using matlab we produce numerical simulations for validation of results of control variables. The results demonstrate that if there is no control (variables/interventios), 900 out 1000 susceptible individuals may be infected (exposed) in very short period. As such a circumstances no agency fighting against COVID-19 could be successful due to its limited resources.
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Comput Methods Programs Biomed · Nov 2020
Segmentation of prostate zones using probabilistic atlas-based method with diffusion-weighted MR images.
Accurate segmentation of prostate and its zones constitute an essential preprocessing step for computer-aided diagnosis and detection system for prostate cancer (PCa) using diffusion-weighted imaging (DWI). However, low signal-to-noise ratio and high variability of prostate anatomic structures are challenging for its segmentation using DWI. We propose a semi-automated framework that segments the prostate gland and its zones simultaneously using DWI. ⋯ The proposed segmentation methodology is stable, accurate, and easy to implement for segmentation of prostate gland and its zones (PZ and TZ). The atlas-based segmentation framework with PV correction algorithm can be incorporated into a computer-aided diagnostic system for PCa localization and treatment planning.
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Comput Methods Programs Biomed · Oct 2020
COVID-19 identification in chest X-ray images on flat and hierarchical classification scenarios.
The COVID-19 can cause severe pneumonia and is estimated to have a high impact on the healthcare system. Early diagnosis is crucial for correct treatment in order to possibly reduce the stress in the healthcare system. The standard image diagnosis tests for pneumonia are chest X-ray (CXR) and computed tomography (CT) scan. Although CT scan is the gold standard, CXR are still useful because it is cheaper, faster and more widespread. This study aims to identify pneumonia caused by COVID-19 from other types and also healthy lungs using only CXR images. ⋯ As far as we know, the top identification rate obtained in this paper is the best nominal rate obtained for COVID-19 identification in an unbalanced environment with more than three classes. We must also highlight the novel proposed hierarchical classification approach for this task, which considers the types of pneumonia caused by the different pathogens and lead us to the best COVID-19 recognition rate obtained here.
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Comput Methods Programs Biomed · Oct 2020
Predictive modeling of blood pressure during hemodialysis: a comparison of linear model, random forest, support vector regression, XGBoost, LASSO regression and ensemble method.
Intradialytic hypotension (IDH) is commonly occurred and links to higher mortality among patients undergoing hemodialysis (HD). Its early prediction and prevention will dramatically improve the quality of life. However, predicting the occurrence of IDH clinically is not simple. The aims of this study are to develop an intelligent system with capability of predicting blood pressure (BP) during HD, and to further compare different machine learning algorithms for next systolic BP (SBP) prediction. ⋯ We compared five machine learning and an ensemble method for next SBP prediction. Among all studied algorithms, the RF and the ensemble method have the better predictive performance. The prediction models using ensemble method for intradialytic BP profiling may be able to assist the HD staff or physicians in individualized care and prompt intervention for patients' safety and improve care of HD patients.