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J Coll Physicians Surg Pak · Feb 2024
Observational StudyTreg-Related Genes Representing a Potential Shared Biological Mechanism Between Clear Cell Renal Carcinoma and Obesity.
- Xiaoqing Zhou, Peng Li, Qiangqiang Xu, and Junjie Ye.
- Department of Urology, Postgraduate Training Base Alliance of Wenzhou Medical University, Lishui City People's Hospital, Lishui, China.
- J Coll Physicians Surg Pak. 2024 Feb 1; 34 (2): 193201193-201.
ObjectiveTo determine the potential shared biological mechanism between obesity and clear cell renal carcinoma (ccRCC).Study DesignObservational study. Place and Duration of the Study: Department of Urology, Lishui People's Hospital, Lishui City, China, from December 2022 to March 2023.MethodologyThe test and validation cohorts were selected from the GEO database. WGCNA and PPI networks were applied to identify shared hub genes. GO/KEGG, GSEA, and ROC curve analyses were applied to explore the potential underlying mechanisms and diagnostic power. Logistic regression was used to select genes to construct the signature. The risk score and various immune-related analyses were performed to assess the clinical and immune performance of the signature. The CellMiner platform was used to screen potential FDA-approved drugs.ResultsPTPRC, TYROBP, ITGB2, CD86, and ITGAM were defined as shared hub genes with good diagnostic power for obesity and ccRCC. Eight immune cells exhibited a positive correlation with the hub genes, while two immune cells showed negative associations. MDSCs and Tregs had the strongest positive associations with the hub genes. The Treg-related pathway exhibited predominant enrichment. The TYROBP, ITGB2, and CD86 genes were selected to construct an immune signature that has good clinical and immune performance. Six FDA-approved drugs were screened.ConclusionFive Treg-related genes were identified as shared hub genes in obese patients and ccRCC patients. A signature was constructed to describe the immune features of ccRCC.Key WordsTreg-related genes, Shared biological mechanism, Immune signature, Obesity, Clear cell renal carcinoma (ccRCC).
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